embassy-domsearch
Extra EMBOSS commands to search for protein domains
Command lineScience
Not tested on a device yet. What that means
Commands in the package
seqfraggleseqnrseqsearchseqsortseqwords
About embassy-domsearch
From Debian's package description
The DOMSEARCH programs were developed by Jon Ison and colleagues at MRC HGMP for their protein domain research. They are included as an EMBASSY package as a work in progress.
Applications in this DOMSEARCH release are seqfraggle (removes fragment sequences from DHF files), seqnr (removes redundancy from DHF files), seqsearch (generates PSI-BLAST hits (DHF file) from a DAF file), seqsort (Remove ambiguous classified sequences from DHF files) and seqwords (Generates DHF files from keyword search of UniProt).
From Debian's description of the embassy-domsearch package, under that package's license.
Dependencies
Depends on
emboss-liblibc6libx11-6emboss-lib
Recommends
Related apps
- embassy-domainatrixExtra EMBOSS commands to handle domain classification fileCommand line
- mmseqs2ultra fast and sensitive protein search and clusteringCommand line
- embassy-domalignExtra EMBOSS commands for protein domain alignmentCommand line
- EMBOSS ExplorerStarts the default web browser on the local EMBOSS Explorer website.
- probcons-extraExtra programs from the probcons packageCommand line
- idba-extraiterative De Bruijn Graph short read assemblers (extra tools)Command line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the embassy-domsearch package, under that package's license.
- Description: Debian's description of the embassy-domsearch package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.