examl
Exascale Maximum Likelihood (ExaML) code for phylogenetic inference
Command lineScience
Not tested on a device yet. What that means
Commands in the package
examlexaml-OMPparse-examl
About examl
From Debian's package description
Exascale Maximum Likelihood (ExaML) is a code for phylogenetic inference using MPI. This code implements the popular RAxML search algorithm for maximum likelihood based inference of phylogenetic trees.
ExaML is a strapped-down light-weight version of RAxML for phylogenetic inference on huge datasets. It can only execute some very basic functions and is intended for computer-savvy users that can write little perl-scripts and have experience using queue submission scripts for clusters. ExaML only implements the CAT and GAMMA models of rate heterogeneity for binary, DNA, and protein data.
ExaML uses a radically new MPI parallelization approach that yields improved parallel efficiency, in particular on partitioned multi-gene or whole-genome datasets. It also implements a new load balancing algorithm that yields better parallel efficiency.
It is up to 4 times faster than its predecessor RAxML-Light and scales to a larger number of processors.
From Debian's description of the examl package, under that package's license.
Dependencies
Depends on
libc6libopenmpi40mpi-default-bin
Related apps
- phymlPhylogenetic estimation using Maximum LikelihoodCommand line
- raxmlRandomized Axelerated Maximum Likelihood of phylogenetic treesCommand line
- hhsuitesensitive protein sequence searching based on HMM-HMM alignmentCommand line
- phastphylogenetic analysis with space/time modelsCommand line
- pamlPhylogenetic Analysis by Maximum Likelihood (PAML)Command line
- tree-puzzleReconstruction of phylogenetic trees by maximum likelihoodCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the examl package, under that package's license.
- Description: Debian's description of the examl package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
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