phast

phylogenetic analysis with space/time models

Command lineScience

Not tested on a device yet. What that means

Commands in the package

phast
all_dists
base_evolve
chooseLines
clean_genes
consEntropy
convert_coords
display_rate_matrix
dless
dlessP
draw_tree
eval_predictions
exoniphy
hmm_train
hmm_tweak
hmm_view
indelFit
indelHistory
maf_parse
makeHKY
modFreqs
msa_diff
msa_split
msa_view
pbsDecode
pbsEncode
pbsScoreMatrix
pbsTrain
phastBias
phastCons
phastMotif
phastOdds
phyloBoot
phyloFit
phyloP
prequel
refeature
stringiphy
treeGen
tree_doctor

About phast

From Debian's package description

PHAST is a software package for comparative and evolutionary genomics. It consists of about half a dozen major programs, plus more than a dozen utilities for manipulating sequence alignments, phylogenetic trees, and genomic annotations. For the most part, PHAST focuses on two kinds of applications: the identification of novel functional elements, including protein-coding exons and evolutionarily conserved sequences; and statistical phylogenetic modeling, including estimation of model parameters, detection of signatures of selection, and reconstruction of ancestral sequences.
PHAST does not support phylogeny reconstruction or sequence alignment, and it is designed for use with DNA sequences only (see Comparison).

From Debian's description of the phast package, under that package's license.

Dependencies

Depends on

libc6
liblapack3orliblapack.so.3
libpcre2-8-0

Related apps

snaplocation of genes from DNA sequence with hidden markov modelCommand line
fsaFast Statistical Alignment of protein, RNA or DNA sequencesCommand line
lokiMCMC linkage analysis on general pedigreesCommand line
hdf5-toolsHDF5 - Runtime toolsCommand line
ncbi-blast+next generation suite of BLAST sequence search toolsCommand line
gbrowseGMOD Generic Genome BrowserCommand line

All Linux science apps

Sources and licenses

Name: the Debian package name.
Summary: Debian's short description of the phast package, under that package's license.
Description: Debian's description of the phast package, under that package's license.
Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
Popularity: Debian Popularity Contest counts.