fastani
Fast alignment-free computation of whole-genome Average Nucleotide Identity
Command lineScience
Not tested on a device yet. What that means
Commands in the package
fastANI
About fastani
From Debian's package description
ANI is defined as mean nucleotide identity of orthologous gene pairs shared between two microbial genomes. FastANI supports pairwise comparison of both complete and draft genome assemblies.
From Debian's description of the fastani package, under that package's license.
Dependencies
Depends on
libc6libgcc-s1libgomp1libgsl28libstdc++6zlib1g
Recommends
r-cran-genoplotr
Related apps
- plinkwhole-genome association analysis toolsetCommand line
- mafftMultiple alignment program for amino acid or nucleotide sequencesCommand line
- quantum-espressoElectronic-Structure and Ab-Initio Molecular Dynamics SuiteCommand line
- clustalwglobal multiple nucleotide or peptide sequence alignmentCommand line
- sim4dbbatch spliced alignment of cDNA sequences to a target genomeCommand line
- fasttreephylogenetic trees from alignments of nucleotide or protein sequencesCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the fastani package, under that package's license.
- Description: Debian's description of the fastani package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.