plink
whole-genome association analysis toolset
Command lineScience
Not tested on a device yet. What that means
Commands in the package
p-linkplink1
About plink
From Debian's package description
plink expects as input the data from SNP (single nucleotide polymorphism) chips of many individuals and their phenotypical description of a disease. It finds associations of single or pairs of DNA variations with a phenotype and can retrieve SNP annotation from an online source.
SNPs can evaluated individually or as pairs for their association with the disease phenotypes. The joint investigation of copy number variations is supported. A variety of statistical tests have been implemented.
Please note: The executable was renamed to plink1 because of a name clash. Please read more about this in /usr/share/doc/plink/README.Debian.
From Debian's description of the plink package, under that package's license.
Dependencies
Depends on
libc6libcrypt1libgcc-s1libstdc++6zlib1g
Recommends
med-config
Related apps
- roaryhigh speed stand alone pan genome pipelineCommand line
- aegeanintegrated genome analysis toolkitCommand line
- seqan-appsC++ library for the analysis of biological sequencesCommand line
- genometoolsversatile genome analysis toolkitCommand line
- mira-assemblerWhole Genome Shotgun and EST Sequence AssemblerCommand line
- vttoolset for short variant discovery in genetic sequence dataCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the plink package, under that package's license.
- Description: Debian's description of the plink package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.