fml-asm
tool for assembling Illumina short reads in small regions
Command lineScience
Not tested on a device yet. What that means
Commands in the package
fml-asm
About fml-asm
From Debian's package description
Fml-asm is a command-line tool for assembling Illumina short reads in regions from 100bp to 10 million bp in size, based on the fermi-lite library. It is largely a light-weight in-memory version of fermikit without generating any intermediate files. It inherits the performance, the relatively small memory footprint and the features of fermikit. In particular, fermi-lite is able to retain heterozygous events and thus can be used to assemble diploid regions for the purpose of variant calling.
From Debian's description of the fml-asm package, under that package's license.
Dependencies
Depends on
libc6zlib1g
Related apps
- montageToolkit for assembling FITS images into mosaicsCommand line
- trimmomaticflexible read trimming tool for Illumina NGS dataCommand line
- macsModel-based Analysis of ChIP-Seq on short reads sequencersCommand line
- velvetNucleic acid sequence assembler for very short readsCommand line
- idbaiterative De Bruijn Graph short read assemblersCommand line
- gmapspliced and SNP-tolerant alignment for mRNA and short readsCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the fml-asm package, under that package's license.
- Description: Debian's description of the fml-asm package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
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