velvet
Nucleic acid sequence assembler for very short reads
Command lineScience
Not tested on a device yet. What that means
Commands in the package
velvetgvelvetg_develvethvelveth_de
About velvet
From Debian's package description
Velvet is a de novo genomic assembler specially designed for short read sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near Cambridge, in the United Kingdom.
Velvet currently takes in short read sequences, removes errors then produces high quality unique contigs. It then uses paired read information, if available, to retrieve the repeated areas between contigs.
From Debian's description of the velvet package, under that package's license.
Dependencies
Depends on
libc6libgomp1zlib1g
Related apps
- velvet-longNucleic acid sequence assembler for very short reads, long versionCommand line
- snaplocation of genes from DNA sequence with hidden markov modelCommand line
- bowtie2ultrafast memory-efficient short read alignerCommand line
- sra-toolkitutilities for the NCBI Sequence Read ArchiveCommand line
- mafftMultiple alignment program for amino acid or nucleotide sequencesCommand line
- bowtieUltrafast memory-efficient short read alignerCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the velvet package, under that package's license.
- Description: Debian's description of the velvet package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.