macs
Model-based Analysis of ChIP-Seq on short reads sequencers
Command lineScience
Not tested on a device yet. What that means
Commands in the package
macs3
About macs
From Debian's package description
MACS empirically models the length of the sequenced ChIP fragments, which tends to be shorter than sonication or library construction size estimates, and uses it to improve the spatial resolution of predicted binding sites. MACS also uses a dynamic Poisson distribution to effectively capture local biases in the genome sequence, allowing for more sensitive and robust prediction. MACS compares favorably to existing ChIP-Seq peak-finding algorithms, is publicly available open source, and can be used for ChIP-Seq with or without control samples.
From Debian's description of the macs package, under that package's license.
Dependencies
Depends on
Related apps
- samtoolsprocessing sequence alignments in SAM, BAM and CRAM formatsCommand line
- hmmerprofile hidden Markov models for protein sequence analysisCommand line
- bowtie2ultrafast memory-efficient short read alignerCommand line
- embossEuropean molecular biology open software suiteCommand line
- bowtieUltrafast memory-efficient short read alignerCommand line
- hisat2graph-based alignment of short nucleotide reads to many genomesCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the macs package, under that package's license.
- Description: Debian's description of the macs package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.