gatb-core

Genome Analysis Toolbox with de-Bruijn graph

Command lineScience

Not tested on a device yet. What that means

Commands in the package

dbgh5
dbginfo
leon

About gatb-core

From Debian's package description

The GATB-CORE project provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on multi-core desktop computers, including very huge amount of reads data coming from any kind of organisms such as bacteria, plants, animals and even complex samples (e.g. metagenomes). Read more about GATB at https://gatb.inria.fr/. By itself GATB-CORE is not an NGS data analysis tool. However, it can be used to create such tools. There already exist a set of ready-to-use tools relying on GATB-CORE library: see https://gatb.inria.fr/software/

From Debian's description of the gatb-core package, under that package's license.

Dependencies

Depends on

libc6
libcppunit-1.15-0
libgcc-s1
libhdf5-310
libstdc++6
zlib1g

Related apps

plinkwhole-genome association analysis toolsetCommand line
hisat2graph-based alignment of short nucleotide reads to many genomesCommand line
roaryhigh speed stand alone pan genome pipelineCommand line
idbaiterative De Bruijn Graph short read assemblersCommand line
aegeanintegrated genome analysis toolkitCommand line
seqan-appsC++ library for the analysis of biological sequencesCommand line

All Linux science apps

Sources and licenses

Name: the Debian package name.
Summary: Debian's short description of the gatb-core package, under that package's license.
Description: Debian's description of the gatb-core package, under that package's license.
Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
Popularity: Debian Popularity Contest counts.