harvest-tools
archiving and postprocessing for reference-compressed genomic multi-alignments
Command lineScience
Not tested on a device yet. What that means
Commands in the package
harvesttools
About harvest-tools
From Debian's package description
HarvestTools is a utility for creating and interfacing with Gingr files, which are efficient archives that the Harvest Suite uses to store reference-compressed multi-alignments, phylogenetic trees, filtered variants and annotations. Though designed for use with Parsnp and Gingr, HarvestTools can also be used for generic conversion between standard bioinformatics file formats.
From Debian's description of the harvest-tools package, under that package's license.
Dependencies
Depends on
libc6libcapnp-1.1.0libgcc-s1libprotobuf32t64libstdc++6zlib1g
Related apps
- e00comprProgram to read/write Arcinfo compressed E00 filesCommand line
- pal2nalconverts proteins to genomic DNA alignmentCommand line
- spalnsplicing-aware transcript-alignment to genomic DNACommand line
- gff2aplotpair-wise alignment-plots for genomic sequences in PostScriptCommand line
- abacasclose gaps in genomic alignments from short readsCommand line
- ardenspecificity control for read alignments using an artificial referenceCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the harvest-tools package, under that package's license.
- Description: Debian's description of the harvest-tools package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.