arden
specificity control for read alignments using an artificial reference
Command lineScience
Not tested on a device yet. What that means
Commands in the package
arden-analyzearden-createarden-filter
About arden
From Debian's package description
ARDEN (Artificial Reference Driven Estimation of false positives in NGS data) is a novel benchmark that estimates error rates based on real experimental reads and an additionally generated artificial reference genome. It allows the computation of error rates specifically for a dataset and the construction of a ROC-curve. Thereby, it can be used to optimize parameters for read mappers, to select read mappers for a specific problem or also to filter alignments based on quality estimation.
From Debian's description of the arden package, under that package's license.
Dependencies
Depends on
python3python3-scipypython3-numpypython3-htseqpython3-matplotlib
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Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the arden package, under that package's license.
- Description: Debian's description of the arden package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.