infernal
inference of RNA secondary structural alignments
Command lineScience
Not tested on a device yet. What that means
Commands in the package
cmaligncmbuildcmcalibratecmconvertcmemitcmfetchcmpresscmscancmsearchcmstat
About infernal
From Debian's package description
Infernal ("INFERence of RNA ALignment") searches DNA sequence databases for RNA structure and sequence similarities. It provides an implementation of a special variant of profile stochastic context-free grammars called covariance models (CMs). A CM is like a sequence profile, but it scores a combination of sequence consensus and RNA secondary structure consensus, so in many cases, it is more capable of identifying RNA homologs that conserve their secondary structure more than their primary sequence.
The tool is an integral component of the Rfam database.
From Debian's description of the infernal package, under that package's license.
Dependencies
Depends on
libc6
Related apps
- probconsPROBabilistic CONSistency-based multiple sequence alignmentCommand line
- mustangmultiple structural alignment of proteinsCommand line
- tm-alignstructural alignment of proteinsCommand line
- rsemRNA-Seq by Expectation-MaximizationCommand line
- bali-phyBayesian Inference of Alignment and PhylogenyCommand line
- ncoilscoiled coil secondary structure predictionCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the infernal package, under that package's license.
- Description: Debian's description of the infernal package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.