mapdamage
tracking and quantifying damage patterns in ancient DNA sequences
Command lineScience
Not tested on a device yet. What that means
Commands in the package
mapDamage
About mapdamage
From Debian's package description
MapDamage is a computational framework written in Python and R, which tracks and quantifies DNA damage patterns among ancient DNA sequencing reads generated by Next-Generation Sequencing platforms.
MapDamage is developed at the Centre for GeoGenetics by the Orlando Group.
From Debian's description of the mapdamage package, under that package's license.
Dependencies
Depends on
python3r-base-corer-cran-gamr-cran-ggplot2r-cran-inlineseqtkpython3-pysamr-cran-rcppr-cran-rcppgsllibopenblas-devorlibblas-devorlibatlas-base-devorlibblas.solibopenblas-devorliblapack-devorlibatlas-base-devorliblapack.so
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- maqmaps short fixed-length polymorphic DNA sequence reads to reference sequencesCommand line
- fastdnamlTool for construction of phylogenetic trees of DNA sequencesCommand line
- krakenassigning taxonomic labels to short DNA sequencesCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the mapdamage package, under that package's license.
- Description: Debian's description of the mapdamage package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.