seqtk
Fast and lightweight tool for processing sequences in the FASTA or FASTQ format
Command lineScience
Not tested on a device yet. What that means
Commands in the package
seqtk
About seqtk
From Debian's package description
Currently, seqtk supports quality based trimming with the phred algorithm, converting fastq to fasta, reverse complementing sequences, extracting or masking subsequences in regions given in a BED/name list file, and more. It contains a subsampling module to sample exactly n sequences or a fraction of sequences.
Seqtk supports both fasta and fastq input files, which can be optionally gzip compressed.
From Debian's description of the seqtk package, under that package's license.
Dependencies
Depends on
libc6zlib1g
Related apps
- fsaFast Statistical Alignment of protein, RNA or DNA sequencesCommand line
- ea-utilscommand-line tools for processing biological sequencing dataCommand line
- samtoolsprocessing sequence alignments in SAM, BAM and CRAM formatsCommand line
- sra-toolkitutilities for the NCBI Sequence Read ArchiveCommand line
SeaViewEdits multiple sequence alignments and prints them in PostScript format.- fastaqFASTA and FASTQ file manipulation toolsCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the seqtk package, under that package's license.
- Description: Debian's description of the seqtk package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.