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maq

maps short fixed-length polymorphic DNA sequence reads to reference sequences

Command lineScience

Install

Not tested on a device yet. What that means

Commands in the package

  • maq
  • farm-run.pl
  • maq.pl
  • maq_eval.pl
  • maq_plot.pl

About maq

From Debian's package description

Maq (short for Mapping and Assembly with Quality) builds mapping assemblies from short reads generated by the next-generation sequencing machines. It was particularly designed for Illumina-Solexa 1G Genetic Analyzer, and has a preliminary functionality to handle ABI SOLiD data. Maq is previously known as mapass2.

Developmemt of Maq stopped in 2008. Its successors are BWA and SAMtools.

From Debian's description of the maq package, under that package's license.

Dependencies

Depends on

  • libc6
  • libgcc-s1
  • libstdc++6
  • zlib1g

On x86-64 it does without libgcc-s1.

Related apps

All Linux science apps

Sources and licenses

  • Name: the Debian package name.
  • Summary: Debian's short description of the maq package, under that package's license.
  • Description: Debian's description of the maq package, under that package's license.
  • Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
  • Popularity: Debian Popularity Contest counts.

More in About the catalog.