maq
maps short fixed-length polymorphic DNA sequence reads to reference sequences
Command lineScience
Not tested on a device yet. What that means
Commands in the package
maqfarm-run.plmaq.plmaq_eval.plmaq_plot.pl
About maq
From Debian's package description
Maq (short for Mapping and Assembly with Quality) builds mapping assemblies from short reads generated by the next-generation sequencing machines. It was particularly designed for Illumina-Solexa 1G Genetic Analyzer, and has a preliminary functionality to handle ABI SOLiD data. Maq is previously known as mapass2.
Developmemt of Maq stopped in 2008. Its successors are BWA and SAMtools.
From Debian's description of the maq package, under that package's license.
Dependencies
Depends on
libc6libgcc-s1libstdc++6zlib1g
On x86-64 it does without libgcc-s1.
Related apps
- snaplocation of genes from DNA sequence with hidden markov modelCommand line
- dolfin-binExecutable scripts for DOLFINCommand line
VeuszScientific plotting and graphing package- apophenia-binApophenia Statistical C Library -- binary packageCommand line
- bcftoolsgenomic variant calling and manipulation of VCF/BCF filesCommand line
- bowtie2ultrafast memory-efficient short read alignerCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the maq package, under that package's license.
- Description: Debian's description of the maq package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.