bowtie2
ultrafast memory-efficient short read aligner
Command lineScience
Not tested on a device yet. What that means
Commands in the package
bowtie2bowtie2-align-lbowtie2-align-sbowtie2-buildbowtie2-build-lbowtie2-build-sbowtie2-inspectbowtie2-inspect-lbowtie2-inspect-s
About bowtie2
From Debian's package description
is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes.
Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes
From Debian's description of the bowtie2 package, under that package's license.
Dependencies
Depends on
Related apps
- astrometry.netAstrometry plate solverCommand line
- mummerEfficient sequence alignment of full genomesCommand line
- sra-toolkitutilities for the NCBI Sequence Read ArchiveCommand line
- bowtieUltrafast memory-efficient short read alignerCommand line
- hisat2graph-based alignment of short nucleotide reads to many genomesCommand line
- subreadtoolkit for processing next-gen sequencing dataCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the bowtie2 package, under that package's license.
- Description: Debian's description of the bowtie2 package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.