megadepth
computes coverage from BigWig and BAM sequencing files
Command lineScience
Not tested on a device yet. What that means
Commands in the package
megadepth
About megadepth
From Debian's package description
A major concern for the interpretation of DNA and RNA (!) sequencing is the number of reads that cover a particular area. This package has interesting statistics for the distinction of coding and non-coding parts of the genome and knows how to interpret transcripts that span multiple exons.
This package is a successor of the program 'bamcount'.
From Debian's description of the megadepth package, under that package's license.
Dependencies
Depends on
libbigwig0t64libc6libgcc-s1libhts3t64libstdc++6
Related apps
- picard-toolsCommand line tools to manipulate SAM and BAM filesCommand line
- staden-io-lib-utilsprograms for manipulating DNA sequencing filesCommand line
- bamkittools for common BAM file manipulationsCommand line
- bamtoolstoolkit for manipulating BAM (genome alignment) filesCommand line
- discosnpdiscovering Single Nucleotide Polymorphism from raw set(s) of readsCommand line
- igorinfers V(D)J recombination processes from sequencing dataCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the megadepth package, under that package's license.
- Description: Debian's description of the megadepth package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.