bamkit
tools for common BAM file manipulations
Command lineScience
Not tested on a device yet. What that means
Commands in the package
bamcleanheader.pybamfilterrg.pybamfixflags.pybamgroupreads.pybamheadrg.pybamlibs.pybamtofastq.pysectosupp
About bamkit
From Debian's package description
This package provides some Python3 tools for common BAM file manipulations.
From Debian's description of the bamkit package, under that package's license.
Dependencies
Depends on
python3python3-pysam
Related apps
- bedtoolssuite of utilities for comparing genomic featuresCommand line
- bcftoolsgenomic variant calling and manipulation of VCF/BCF filesCommand line
- picard-toolsCommand line tools to manipulate SAM and BAM filesCommand line
- seqkitcross-platform and ultrafast toolkit for FASTA/Q file manipulationCommand line
- fastaqFASTA and FASTQ file manipulation toolsCommand line
- bamtoolstoolkit for manipulating BAM (genome alignment) filesCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the bamkit package, under that package's license.
- Description: Debian's description of the bamkit package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.