ncbi-seg
tool to mask segments of low compositional complexity in amino acid sequences
Command lineScience
Not tested on a device yet. What that means
Commands in the package
ncbi-seg
About ncbi-seg
From Debian's package description
ncbi-seg (a.k.a. SEG) is a program for identifying and masking segments of low compositional complexity in amino acid sequences.
ncbi-seg divides sequences into contrasting segments of low-complexity and high-complexity. Low-complexity segments defined by the algorithm represent "simple sequences" or "compositionally-biased regions".
This program is inappropriate for masking nucleotide sequences and, in fact, may strip some nucleotide ambiguity codes from nt. sequences as they are being read.
From Debian's description of the ncbi-seg package, under that package's license.
Dependencies
Depends on
libc6
Related apps
- dialignSegment-based multiple sequence alignmentCommand line
- prankProbabilistic Alignment Kit for DNA, codon and amino-acid sequencesCommand line
- dialign-txSegment-based multiple sequence alignmentCommand line
- velvetNucleic acid sequence assembler for very short readsCommand line
- yanagibafilter low quality Oxford Nanopore reads basecalled with AlbacoreCommand line
- ncbi-acc-downloaddownload genome files from NCBI by accessionCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the ncbi-seg package, under that package's license.
- Description: Debian's description of the ncbi-seg package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
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