poa
Partial Order Alignment for multiple sequence alignment
Command lineScience
Not tested on a device yet. What that means
Commands in the package
poa
About poa
From Debian's package description
POA is Partial Order Alignment, a fast program for multiple sequence alignment (MSA) in bioinformatics. Its advantages are speed, scalability, sensitivity, and the superior ability to handle branching / indels in the alignment. Partial order alignment is an approach to MSA, which can be combined with existing methods such as progressive alignment. POA optimally aligns a pair of MSAs and which therefore can be applied directly to progressive alignment methods such as CLUSTAL. For large alignments, Progressive POA is 10-30 times faster than CLUSTALW.
From Debian's description of the poa package, under that package's license.
Dependencies
Depends on
libc6
Related apps
- fsaFast Statistical Alignment of protein, RNA or DNA sequencesCommand line
- samtoolsprocessing sequence alignments in SAM, BAM and CRAM formatsCommand line
- muscleMultiple alignment program of protein sequencesCommand line
- clustaloGeneral-purpose multiple sequence alignment program for proteinsCommand line
- mafftMultiple alignment program for amino acid or nucleotide sequencesCommand line
SeaViewEdits multiple sequence alignments and prints them in PostScript format.
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the poa package, under that package's license.
- Description: Debian's description of the poa package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.