proalign
Probabilistic multiple alignment program
Command lineScience
Not tested on a device yet. What that means
Commands in the package
proalign
About proalign
From Debian's package description
ProAlign performs probabilistic sequence alignments using hidden Markov models (HMM). It includes a graphical interface (GUI) allowing to (i) perform alignments of nucleotide or amino-acid sequences, (ii) view the quality of solutions, (iii) filter the unreliable alignment regions and (iv) export alignments to other software.
ProAlign uses a progressive method, such that multiple alignment is created stepwise by performing pairwise alignments in the nodes of a guide tree. Sequences are described with vectors of character probabilities, and each pairwise alignment reconstructs the ancestral (parent) sequence by computing the probabilities of different characters according to an evolutionary model.
From Debian's description of the proalign package, under that package's license.
Dependencies
Depends on
default-jre
Related apps
- muscleMultiple alignment program of protein sequencesCommand line
- clustaloGeneral-purpose multiple sequence alignment program for proteinsCommand line
- mafftMultiple alignment program for amino acid or nucleotide sequencesCommand line
- kalignGlobal and progressive multiple sequence alignmentCommand line
- probconsPROBabilistic CONSistency-based multiple sequence alignmentCommand line
- prodamultiple alignment of protein sequencesCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the proalign package, under that package's license.
- Description: Debian's description of the proalign package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.