qtltools

Tool set for molecular QTL discovery and analysis

Command lineScience

Not tested on a device yet. What that means

Commands in the package

QTLtools
qtltools_plotTrans.R
qtltools_runFDR_atrans.R
qtltools_runFDR_cis.R
qtltools_runFDR_ftrans.R

About qtltools

From Debian's package description

QTLtools is a tool set for molecular Quantitative Trait Loci (QTL) discovery and analysis. It allows user to go from the raw sequence data to collection of molecular QTL in few easy-to-perform steps. QTLtools contains multiple methods to prepare the data, to discover proximal and distal molecular QTL and to finally integrate them with GWAS variants and functional annotations of the genome.

From Debian's description of the qtltools package, under that package's license.

Dependencies

Depends on

libblas3orlibblas.so.3
libboost-iostreams1.83.0
libboost-program-options1.83.0
libc6
libgcc-s1
libgsl28
libhts3t64
libstdc++6
r-mathlib
r-base-core

Recommends

r-bioc-qvalue

Related apps

gromacsMolecular dynamics simulator, with building and analysis toolsCommand line
dellyStructural variant discovery by read analysisCommand line
fastqtlQuantitative Trait Loci (QTL) mapper in cis for molecular phenotypesCommand line
garliphylogenetic analysis of molecular sequence data using maximum-likelihoodCommand line
votcaMolecular dynamics analysis - coarse-graining and charge transportCommand line
garli-mpiphylogenetic analysis of molecular sequence data using maximum-likelihood (MPI)Command line

All Linux science apps

Sources and licenses

Name: the Debian package name.
Summary: Debian's short description of the qtltools package, under that package's license.
Description: Debian's description of the qtltools package, under that package's license.
Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
Popularity: Debian Popularity Contest counts.