fastqtl

Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes

Command lineScience

Not tested on a device yet. What that means

Commands in the package

fastQTL
annotate_outputs.py
merge_chunks.py
run_FastQTL_threaded.py
run_chunk.py
sort_index_pairs.py

About fastqtl

From Debian's package description

The goal of FastQTL is to identify single-nucleotide polymorphisms (SNPs) which are significantly associated with various molecular phenotypes (i.e. expression of known genes, cytosine methylation levels, etc). It performs scans for all possible phenotype-variant pairs in cis (i.e. variants located within a specific window around a phenotype). FastQTL implements a new permutation scheme (Beta approximation) to accurately and rapidly correct for multiple-testing at both the genotype and phenotype levels.

From Debian's description of the fastqtl package, under that package's license.

Dependencies

Depends on

libblas3orlibblas.so.3
libboost-iostreams1.83.0
libboost-program-options1.83.0
libc6
libgcc-s1
libgsl28
libhts3t64
libstdc++6
r-mathlib
python3
python3

Recommends

r-cran-qvalue
r-cran-tools
r-cran-argparser

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bioperlPerl tools for computational molecular biologyCommand line

All Linux science apps

Sources and licenses

Name: the Debian package name.
Summary: Debian's short description of the fastqtl package, under that package's license.
Description: Debian's description of the fastqtl package, under that package's license.
Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
Popularity: Debian Popularity Contest counts.