delly
Structural variant discovery by read analysis
Command lineScience
Not tested on a device yet. What that means
Commands in the package
delly
About delly
From Debian's package description
Delly performs Structural variant discovery by integrated paired-end and split-read analysis. It discovers, genotypes and visualizes deletions, tandem duplications, inversions and translocations at single-nucleotide resolution in short-read massively parallel sequencing data. It uses paired-ends, split-reads and read-depth to sensitively and accurately delineate genomic rearrangements throughout the genome.
From Debian's description of the delly package, under that package's license.
Dependencies
Depends on
libboost-filesystem1.83.0libboost-iostreams1.83.0libboost-program-options1.83.0libc6libgcc-s1libgomp1libhts3t64libstdc++6
Related apps
- macsModel-based Analysis of ChIP-Seq on short reads sequencersCommand line
- metaphlanMetagenomic Phylogenetic AnalysisCommand line
- dalignerlocal alignment discovery between long nucleotide sequencing readsCommand line
- svimStructural variant caller for long sequencing readsCommand line
- cutesvcomprehensive discovery of structural variations of genomic sequencesCommand line
- vttoolset for short variant discovery in genetic sequence dataCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the delly package, under that package's license.
- Description: Debian's description of the delly package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.