rampler
module for sampling genomic sequences
Command lineScience
Not tested on a device yet. What that means
Commands in the package
rampler
About rampler
From Debian's package description
Standalone module for sampling genomic sequences. It supports two modes, random subsampling of sequencer data to a desired depth (given the reference length) and file splitting to desired size in bytes.
Rampler takes as first input argument a file in FASTA/FASTQ format which can be compressed with gzip. The rest of input parameters depend on the mode of operation. The output is stored into a file(s) which is in the same format as the input file but uncompressed.
From Debian's description of the rampler package, under that package's license.
Dependencies
Depends on
libc6libgcc-s1libstdc++6zlib1g
Related apps
- FastQC quality controlquality control for high throughput sequence data
- minimap2versatile pairwise aligner for genomic and spliced nucleotide sequencesCommand line
- bbmapBBTools genomic aligner and other tools for short sequencesCommand line
- seergenomic sequence element (kmer) enrichment analysisCommand line
- kmamapping genomic sequences to raw reads directly against redundant databasesCommand line
- cutesvcomprehensive discovery of structural variations of genomic sequencesCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the rampler package, under that package's license.
- Description: Debian's description of the rampler package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
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