kma
mapping genomic sequences to raw reads directly against redundant databases
Command lineScience
Not tested on a device yet. What that means
Commands in the package
kmakma_indexkma_shm
About kma
From Debian's package description
KMA is mapping a method designed to map raw reads directly against redundant databases, in an ultra-fast manner using seed and extend. KMA is particularly good at aligning high quality reads against highly redundant databases, where unique matches often does not exist. It works for long low quality reads as well, such as those from Nanopore. Non- unique matches are resolved using the "ConClave" sorting scheme, and a consensus sequence are outputtet in addition to other common attributes.
From Debian's description of the kma package, under that package's license.
Dependencies
Depends on
libc6zlib1g
Related apps
- FastQC quality controlquality control for high throughput sequence data
RFDumpTool to directly interoperate with an RFID reader- bioperlPerl tools for computational molecular biologyCommand line
- ncbi-entrez-directNCBI Entrez utilities on the command lineCommand line
SeaViewEdits multiple sequence alignments and prints them in PostScript format.- minimap2versatile pairwise aligner for genomic and spliced nucleotide sequencesCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the kma package, under that package's license.
- Description: Debian's description of the kma package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.