sambamba
tools for working with SAM/BAM data
Command lineScience
Not tested on a device yet. What that means
Commands in the package
sambamba
About sambamba
From Debian's package description
Sambamba positions itself as a performant alternative to samtools and provides tools for
- Powerful filtering with sambamba view --filter
- Picard-like SAM header merging in the merge tool
- Optional for operations on whole BAMs
- Fast copying of a region to a new file with the slice tool
- Duplicate marking/removal, using the Picard criteria
From Debian's description of the sambamba package, under that package's license.
Dependencies
Depends on
libc6libgcc-s1liblz4-1libphobos2-ldc-shared110zlib1g
Related apps
- ea-utilscommand-line tools for processing biological sequencing dataCommand line
- picard-toolsCommand line tools to manipulate SAM and BAM filesCommand line
- rsemRNA-Seq by Expectation-MaximizationCommand line
- bamclipperRemove gene-specific primer sequences from SAM/BAM alignmentsCommand line
- pirsProfile based Illumina pair-end Reads SimulatorCommand line
- seqan-appsC++ library for the analysis of biological sequencesCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the sambamba package, under that package's license.
- Description: Debian's description of the sambamba package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.