bamclipper
Remove gene-specific primer sequences from SAM/BAM alignments
Command lineScience
Not tested on a device yet. What that means
Commands in the package
bamclipper.sh
About bamclipper
From Debian's package description
Remove gene-specific primer sequences from SAM/BAM alignments of PCR amplicons by soft-clipping.
bamclipper.sh soft-clips gene-specific primers from BAM alignment file based on genomic coordinates of primer pairs in BEDPE format.
From Debian's description of the bamclipper package, under that package's license.
Dependencies
Depends on
Related apps
- picard-toolsCommand line tools to manipulate SAM and BAM filesCommand line
- kalignGlobal and progressive multiple sequence alignmentCommand line
- probconsPROBabilistic CONSistency-based multiple sequence alignmentCommand line
- prodamultiple alignment of protein sequencesCommand line
- clustalwglobal multiple nucleotide or peptide sequence alignmentCommand line
- dialignSegment-based multiple sequence alignmentCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the bamclipper package, under that package's license.
- Description: Debian's description of the bamclipper package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.