simka

comparative metagenomics method dedicated to NGS datasets

Command lineScience

Not tested on a device yet. What that means

Commands in the package

simka
simkaCount
simkaCountProcess
simkaMerge
simkaMinCore

About simka

From Debian's package description

Simka is a de novo comparative metagenomics tool. Simka represents each dataset as a k-mer spectrum and compute several classical ecological distances between them.

From Debian's description of the simka package, under that package's license.

Dependencies

Depends on

libc6
libgatbcore3
libgcc-s1
libhdf5-310
libstdc++6
zlib1g

Related apps

simkaminapproximate comparative metagenomics method dedicated to NGS datasetsCommand line
trimmomaticflexible read trimming tool for Illumina NGS dataCommand line
mitoolsview, convert and perform basic maths with medical image datasetsCommand line
metaphlanMetagenomic Phylogenetic AnalysisCommand line
macsyfinderdetection of macromolecular systems in protein datasetsCommand line
vsearchtool for processing metagenomic sequencesCommand line

All Linux science apps

Sources and licenses

Name: the Debian package name.
Summary: Debian's short description of the simka package, under that package's license.
Description: Debian's description of the simka package, under that package's license.
Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
Popularity: Debian Popularity Contest counts.