vsearch
tool for processing metagenomic sequences
Command lineScience
Not tested on a device yet. What that means
Commands in the package
vsearch
About vsearch
From Debian's package description
Versatile 64-bit multithreaded tool for processing metagenomic sequences, including searching, clustering, chimera detection, dereplication, sorting, masking and shuffling
The aim of this project is to create an alternative to the USEARCH tool developed by Robert C. Edgar (2010). The new tool should:
- have a 64-bit design that handles very large databases and much more than 4GB of memory
- be as accurate or more accurate than usearch
- be as fast or faster than usearch
From Debian's description of the vsearch package, under that package's license.
Dependencies
Depends on
libc6libgcc-s1libstdc++6
Related apps
- seqtkFast and lightweight tool for processing sequences in the FASTA or FASTQ formatCommand line
- metaphlanMetagenomic Phylogenetic AnalysisCommand line
- microbegpsexplorative taxonomic profiling tool for metagenomic dataCommand line
- simkacomparative metagenomics method dedicated to NGS datasetsCommand line
- radiantexplore hierarchical metagenomic data with zoomable pie chartsCommand line
- skewerpost-processing of high-throughput DNA sequence readsCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the vsearch package, under that package's license.
- Description: Debian's description of the vsearch package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.