simkamin
approximate comparative metagenomics method dedicated to NGS datasets
Command lineScience
Not tested on a device yet. What that means
Commands in the package
simkaMinsimkaMin_update
About simkamin
From Debian's package description
Simka is a de novo comparative metagenomics tool. Simka represents each dataset as a k-mer spectrum and compute several classical ecological distances between them.
The difference with Simka stands in the fact that SimkaMin outputs approximate (but very similar) results by subsampling the kmer space. With this strategy, and with default parameters, SimkaMin is an order of magnitude faster, uses 10 times less memory and 70 times less disk than Simka.
From Debian's description of the simkamin package, under that package's license.
Dependencies
Depends on
Related apps
- simkacomparative metagenomics method dedicated to NGS datasetsCommand line
- casacore-data-tai-utcDifference table between TAI and UTC for casacoreCommand line
- gap-coreGAP computer algebra system, core componentsCommand line
- trimmomaticflexible read trimming tool for Illumina NGS dataCommand line
- mitoolsview, convert and perform basic maths with medical image datasetsCommand line
- bedopshigh-performance genomic feature operationsCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the simkamin package, under that package's license.
- Description: Debian's description of the simkamin package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.