bedops

high-performance genomic feature operations

Command lineScience

Not tested on a device yet. What that means

Commands in the package

bedops
bam2bed
bam2bed_gnuParallel
bam2bed_sge
bam2starch
bam2starch_gnuParallel
bam2starch_sge
bedextract
bedmap
bedops-starch
closest-features
convert2bed
gff2bed
gff2starch
gtf2bed
gtf2starch
gvf2bed
gvf2starch
psl2bed
psl2starch
rmsk2bed
rmsk2starch
sam2bed
sam2starch
sort-bed
starch-diff
starchcat
starchcluster_gnuParallel
starchcluster_sge
starchstrip
unstarch
update-sort-bed-migrate-candidates
vcf2bed
vcf2starch
wig2bed
wig2starch

About bedops

From Debian's package description

BEDOPS is a suite of tools to address common questions raised in genomic studies, mostly with regard to overlap and proximity relationships between data sets. It aims to be scalable and flexible, facilitating the efficient and accurate analysis and management of large-scale genomic data.

From Debian's description of the bedops package, under that package's license.

Dependencies

Depends on

libbz2-1.0
libc6
libgcc-s1
libjansson4
libstdc++6
zlib1g
python3
tcsh

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Sources and licenses

Name: the Debian package name.
Summary: Debian's short description of the bedops package, under that package's license.
Description: Debian's description of the bedops package, under that package's license.
Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
Popularity: Debian Popularity Contest counts.