ssake
genomics application for assembling millions of very short DNA sequences
Command lineScience
Not tested on a device yet. What that means
Commands in the package
ssaketqs
About ssake
From Debian's package description
The Short Sequence Assembly by K-mer search and 3′ read Extension (SSAKE) is a genomics application for aggressively assembling millions of short nucleotide sequences by progressively searching for perfect 3′-most k-mers using a DNA prefix tree. SSAKE is designed to help leverage the information from short sequences reads by stringently clustering them into contigs that can be used to characterize novel sequencing targets.
From Debian's description of the ssake package, under that package's license.
Dependencies
Depends on
Related apps
- FastQC quality controlquality control for high throughput sequence data
- montageToolkit for assembling FITS images into mosaicsCommand line
- wisecomparison of biopolymers, like DNA and protein sequencesCommand line
- minimap2versatile pairwise aligner for genomic and spliced nucleotide sequencesCommand line
- prankProbabilistic Alignment Kit for DNA, codon and amino-acid sequencesCommand line
- bbmapBBTools genomic aligner and other tools for short sequencesCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the ssake package, under that package's license.
- Description: Debian's description of the ssake package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.