tigr-glimmer
Gene detection in archea and bacteria
Command lineScience
Not tested on a device yet. What that means
Commands in the package
tigr-glimmertigr-run-glimmer3
About tigr-glimmer
From Debian's package description
Developed by the TIGR institute this software detects coding sequences in bacteria and archea.
Glimmer is a system for finding genes in microbial DNA, especially the genomes of bacteria and archaea. Glimmer (Gene Locator and Interpolated Markov Modeler) uses interpolated Markov models (IMMs) to identify the coding regions and distinguish them from noncoding DNA.
From Debian's description of the tigr-glimmer package, under that package's license.
Dependencies
Depends on
libc6libgcc-s1libstdc++6
Related apps
- bcftoolsgenomic variant calling and manipulation of VCF/BCF filesCommand line
- ncbi-entrez-directNCBI Entrez utilities on the command lineCommand line
- pari-gp2cPARI/GP GP to C compilerCommand line
- rsemRNA-Seq by Expectation-MaximizationCommand line
- metaphlanMetagenomic Phylogenetic AnalysisCommand line
- reliontoolkit for 3D reconstructions in cryo-electron microscopyCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the tigr-glimmer package, under that package's license.
- Description: Debian's description of the tigr-glimmer package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.