uc-echo
error correction algorithm designed for short-reads from NGS
Command lineScience
Not tested on a device yet. What that means
Commands in the package
uc-echo
About uc-echo
From Debian's package description
ECHO is an error correction algorithm designed for short-reads from next-generation sequencing platforms such as Illumina's Genome Analyzer II. The algorithm uses a Bayesian framework to improve the quality of the reads in a given data set by employing maximum a posteriori estimation.
From Debian's description of the uc-echo package, under that package's license.
Dependencies
Depends on
libc6libgcc-s1libstdc++6python3python3-scipy
Related apps
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- trimmomaticflexible read trimming tool for Illumina NGS dataCommand line
- macsModel-based Analysis of ChIP-Seq on short reads sequencersCommand line
- velvetNucleic acid sequence assembler for very short readsCommand line
- idbaiterative De Bruijn Graph short read assemblersCommand line
- gmapspliced and SNP-tolerant alignment for mRNA and short readsCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the uc-echo package, under that package's license.
- Description: Debian's description of the uc-echo package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
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