unikmer
Toolkit for nucleic acid k-mer analysis
Command lineScience
Not tested on a device yet. What that means
Commands in the package
unikmer
About unikmer
From Debian's package description
unikmer is a golang package and a toolkit for nucleic acid k-mer analysis, providing functions including set operation k-mers optional with TaxIDs but without count information.
K-mers are either encoded (k<=32) or hashed (arbitrary k) into uint64, and serialized in binary file with extension .unik.
TaxIDs can be assigned when counting k-mers from genome sequences, and LCA (Lowest Common Ancestor) is computed during set opertions including computing union, intersecton, set difference, unique and repeated k-mers.
From Debian's description of the unikmer package, under that package's license.
Dependencies
Depends on
libc6
Related apps
- velvetNucleic acid sequence assembler for very short readsCommand line
- aegeanintegrated genome analysis toolkitCommand line
- kraken2taxonomic classification system using exact k-mer matchesCommand line
- genometoolsversatile genome analysis toolkitCommand line
- genometestertoolkit for performing set operations on k-mer listsCommand line
- meltingcompute the melting temperature of nucleic acid duplexCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the unikmer package, under that package's license.
- Description: Debian's description of the unikmer package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
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