melting
compute the melting temperature of nucleic acid duplex
Command lineScience
Not tested on a device yet. What that means
Commands in the package
melting
About melting
From Debian's package description
This program computes, for a nucleic acid duplex, the enthalpy, the entropy and the melting temperature of the helix-coil transitions. Three types of hybridisation are possible: DNA/DNA, DNA/RNA, and RNA/RNA. The program first computes the hybridisation enthalpy and entropy from the elementary parameters of each Crick's pair by the nearest-neighbor method. Then the melting temperature is computed. The set of thermodynamic parameters can be easily changed, for instance following an experimental breakthrough.
From Debian's description of the melting package, under that package's license.
Dependencies
Depends on
default-jreorjava-runtimejava-wrappers
Related apps
- velvetNucleic acid sequence assembler for very short readsCommand line
- Sequence alignments neobiocomputes alignments of amino acid and nucleotide sequences
- unikmerToolkit for nucleic acid k-mer analysisCommand line
- velvet-longNucleic acid sequence assembler for very short reads, long versionCommand line
- prankProbabilistic Alignment Kit for DNA, codon and amino-acid sequencesCommand line
- fastmlmaximum likelihood ancestral amino-acid sequence reconstructionCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the melting package, under that package's license.
- Description: Debian's description of the melting package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.