abpoa
adaptive banded Partial Order Alignment
Command lineScience
Not tested on a device yet. What that means
Commands in the package
abpoaabpoa.generic
About abpoa
From Debian's package description
abPOA is an extended version of Partial Order Alignment (POA) that performs adaptive banded dynamic programming (DP) with an SIMD implementation. abPOA can perform multiple sequence alignment (MSA) on a set of input sequences and generate a consensus sequence by applying the heaviest bundling algorithm to the final alignment graph.
abPOA can generate high-quality consensus sequences from error-prone long reads and offer significant speed improvement over existing tools.
abPOA supports three alignment modes (global, local, extension) and flexible scoring schemes that allow linear, affine and convex gap penalties. It right now supports SSE2/SSE4.1/AVX2 vectorization.
For more information please refer to the paper[1] published in Bioinformatics.
[1]: https://dx.doi.org/10.1093/bioinformatics/btaa963
From Debian's description of the abpoa package, under that package's license.
Dependencies
Depends on
libc6zlib1ggraphviz
Related apps
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- sicklewindowed adaptive trimming tool for FASTQ files using qualityCommand line
- spoaSIMD partial order alignment toolCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the abpoa package, under that package's license.
- Description: Debian's description of the abpoa package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.