Commands in the package
spoa
About spoa
From Debian's package description
Spoa (SIMD POA) is a c++ implementation of the partial order alignment (POA) algorithm (as described in 10.1093/bioinformatics/18.3.452) which is used to generate consensus sequences (as described in 10.1093/bioinformatics/btg109). It supports three alignment modes: local (Smith-Waterman), global (Needleman-Wunsch) and semi-global alignment (overlap).
From Debian's description of the spoa package, under that package's license.
Dependencies
Depends on
libc6libgcc-s1libspoa7.0.0libstdc++6zlib1g
Related apps
- hhsuitesensitive protein sequence searching based on HMM-HMM alignmentCommand line
- poaPartial Order Alignment for multiple sequence alignmentCommand line
- virulencefinderidentify virulence genes in total or partial sequenced isolates of bacteriaCommand line
- abpoaadaptive banded Partial Order AlignmentCommand line
- pinfishCollection of tools to annotate genomes using long read transcriptomics dataCommand line
- votcaMolecular dynamics analysis - coarse-graining and charge transportCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the spoa package, under that package's license.
- Description: Debian's description of the spoa package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
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