artfastqgenerator
outputs artificial FASTQ files derived from a reference genome
Command lineScience
Not tested on a device yet. What that means
Commands in the package
artfastqgenerator
About artfastqgenerator
From Debian's package description
ArtificialFastqGenerator takes the reference genome (in FASTA format) as input and outputs artificial FASTQ files in the Sanger format. It can accept Phred base quality scores from existing FASTQ files, and use them to simulate sequencing errors. Since the artificial FASTQs are derived from the reference genome, the reference genome provides a gold-standard for calling variants (Single Nucleotide Polymorphisms (SNPs) and insertions and deletions (indels)). This enables evaluation of a Next Generation Sequencing (NGS) analysis pipeline which aligns reads to the reference genome and then calls the variants.
From Debian's description of the artfastqgenerator package, under that package's license.
Dependencies
Depends on
default-jre
Related apps
- fastaqFASTA and FASTQ file manipulation toolsCommand line
- ragoutReference-Assisted Genome Ordering UTilityCommand line
- last-aligngenome-scale comparison of biological sequencesCommand line
- mipeTools to store PCR-derived dataCommand line
- seergenomic sequence element (kmer) enrichment analysisCommand line
- qcatdemultiplexing Oxford Nanopore reads from FASTQ filesCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the artfastqgenerator package, under that package's license.
- Description: Debian's description of the artfastqgenerator package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
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