qcat
demultiplexing Oxford Nanopore reads from FASTQ files
Command lineScience
Not tested on a device yet. What that means
Commands in the package
qcatqcat-evalqcat-eval-truthqcat-roc
About qcat
From Debian's package description
Qcat is a command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files. It accepts basecalled FASTQ files and splits the reads into separate FASTQ files based on their barcode. Qcat makes the demultiplexing algorithms used in albacore/guppy and EPI2ME available to be used locally with FASTQ files. Currently qcat implements the EPI2ME algorithm.
From Debian's description of the qcat package, under that package's license.
Dependencies
Depends on
python3-biopythonpython3-parasailpython3-yamlpython3
Related apps
- sra-toolkitutilities for the NCBI Sequence Read ArchiveCommand line
- e00comprProgram to read/write Arcinfo compressed E00 filesCommand line
- fastaqFASTA and FASTQ file manipulation toolsCommand line
- staden-io-lib-utilsprograms for manipulating DNA sequencing filesCommand line
- phastphylogenetic analysis with space/time modelsCommand line
- ont-fast5-apisimple interface to HDF5 files of the Oxford Nanopore .fast5 file formatCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the qcat package, under that package's license.
- Description: Debian's description of the qcat package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.