beagle
Genotype calling, genotype phasing and imputation of ungenotyped markers
Command lineScience
Not tested on a device yet. What that means
Commands in the package
beaglebref3
About beagle
From Debian's package description
Beagle performs genotype calling, genotype phasing, imputation of ungenotyped markers, and identity-by-descent segment detection. Genotypic imputation works on phased haplotypes using a Li and Stephens haplotype frequency model. Beagle also implements the Refined IBD algorithm for detecting homozygosity-by-descent (HBD) and identity-by-descent (IBD) segments.
From Debian's description of the beagle package, under that package's license.
Dependencies
Depends on
default-jrelibhtsjdk-java
Related apps
- bcftoolsgenomic variant calling and manipulation of VCF/BCF filesCommand line
- metaphlanMetagenomic Phylogenetic AnalysisCommand line
- tidditstructural variant callingCommand line
- snippyrapid haploid variant calling and core genome alignmentCommand line
- chromimputeLarge-scale systematic epigenome imputationCommand line
- otf2-toolsOpen Trace Format support library - toolsCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the beagle package, under that package's license.
- Description: Debian's description of the beagle package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.