Commands in the package
tiddit
About tiddit
From Debian's package description
TIDDIT is a tool to used to identify chromosomal rearrangements using Mate Pair or Paired End sequencing data. TIDDIT identifies intra and inter- chromosomal translocations, deletions, tandem-duplications and inversions, using supplementary alignments as well as discordant pairs.
TIDDIT has two analysis modules. The sv mode, which is used to search for structural variants. And the cov mode that analyse the read depth of a bam file and generates a coverage report.
From Debian's description of the tiddit package, under that package's license.
Dependencies
Depends on
Related apps
- bcftoolsgenomic variant calling and manipulation of VCF/BCF filesCommand line
- svimStructural variant caller for long sequencing readsCommand line
- dellyStructural variant discovery by read analysisCommand line
- beagleGenotype calling, genotype phasing and imputation of ungenotyped markersCommand line
- lumpy-svgeneral probabilistic framework for structural variant discoveryCommand line
- nanosvstructural variant caller for nanopore dataCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the tiddit package, under that package's license.
- Description: Debian's description of the tiddit package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
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