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vcftools

Collection of tools to work with VCF files

Command lineScience

Install

Not tested on a device yet. What that means

Commands in the package

  • vcftools
  • fill-aa
  • fill-an-ac
  • fill-fs
  • fill-ref-md5
  • vcf-annotate
  • vcf-compare
  • vcf-concat
  • vcf-consensus
  • vcf-contrast
  • vcf-convert
  • vcf-fix-newlines
  • vcf-fix-ploidy
  • vcf-indel-stats
  • vcf-isec
  • vcf-merge
  • vcf-phased-join
  • vcf-query
  • vcf-shuffle-cols
  • vcf-sort
  • vcf-stats
  • vcf-subset
  • vcf-to-tab
  • vcf-tstv
  • vcf-validator

About vcftools

From Debian's package description

VCFtools is a program package designed for working with VCF files, such as those generated by the 1000 Genomes Project. The aim of VCFtools is to provide methods for working with VCF files: validating, merging, comparing and calculate some basic population genetic statistics.

From Debian's description of the vcftools package, under that package's license.

Dependencies

Depends on

  • libc6
  • libgcc-s1
  • libstdc++6
  • zlib1g
  • perl

Recommends

  • tabix

Related apps

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Sources and licenses

  • Name: the Debian package name.
  • Summary: Debian's short description of the vcftools package, under that package's license.
  • Description: Debian's description of the vcftools package, under that package's license.
  • Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
  • Popularity: Debian Popularity Contest counts.

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