bio-vcf
domain specific language (DSL) for processing the VCF format
Command lineScience
Not tested on a device yet. What that means
Commands in the package
bio-vcf
About bio-vcf
From Debian's package description
Bio-vcf provides a domain specific language (DSL) for processing the VCF format. Record named fields can be queried with regular expressions, e.g.
sample.dp>20 and rec.filter !~ /LowQD/ and rec.tumor.bcount[rec.alt]>4
Bio-vcf is a new generation VCF parser, filter and converter. Bio-vcf is not only very fast for genome-wide (WGS) data, it also comes with a really nice filtering, evaluation and rewrite language and it can output any type of textual data, including VCF header and contents in RDF and JSON.
From Debian's description of the bio-vcf package, under that package's license.
Dependencies
Depends on
Related apps
- vcftoolsCollection of tools to work with VCF filesCommand line
- seqtkFast and lightweight tool for processing sequences in the FASTA or FASTQ formatCommand line
- surpyvormodification of VCF files with SURVIVORCommand line
- bio-rainbowclustering and assembling short reads for bioinformaticsCommand line
- snippyrapid haploid variant calling and core genome alignmentCommand line
- cctvisually comparing bacterial, plasmid, chloroplast, or mitochondrial sequencesCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the bio-vcf package, under that package's license.
- Description: Debian's description of the bio-vcf package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
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