bowtie
Ultrafast memory-efficient short read aligner
Command lineScience
Not tested on a device yet. What that means
Commands in the package
bowtiebowtie-align-lbowtie-align-l-debugbowtie-align-sbowtie-align-s-debugbowtie-buildbowtie-build-lbowtie-build-l-debugbowtie-build-sbowtie-build-s-debugbowtie-inspectbowtie-inspect-lbowtie-inspect-l-debugbowtie-inspect-sbowtie-inspect-s-debug
About bowtie
From Debian's package description
This package addresses the problem to interpret the results from the latest (2010) DNA sequencing technologies. Those will yield fairly short stretches and those cannot be interpreted directly. It is the challenge for tools like Bowtie to give a chromosomal location to the short stretches of DNA sequenced per run.
Bowtie aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end).
From Debian's description of the bowtie package, under that package's license.
Dependencies
Depends on
libc6libgcc-s1libstdc++6zlib1gpython3
Related apps
- astrometry.netAstrometry plate solverCommand line
- mummerEfficient sequence alignment of full genomesCommand line
- bowtie2ultrafast memory-efficient short read alignerCommand line
- sra-toolkitutilities for the NCBI Sequence Read ArchiveCommand line
- hisat2graph-based alignment of short nucleotide reads to many genomesCommand line
- subreadtoolkit for processing next-gen sequencing dataCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the bowtie package, under that package's license.
- Description: Debian's description of the bowtie package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.