subread

toolkit for processing next-gen sequencing data

Command lineScience

Not tested on a device yet. What that means

Commands in the package

exactSNP
featureCounts
subindel
subjunc
sublong
subread-align
subread-buildindex

About subread

From Debian's package description

Subread aligner can be used to align both gDNA-seq and RNA-seq reads. Subjunc aligner was specified designed for the detection of exon-exon junction. For the mapping of RNA-seq reads, Subread performs local alignments and Subjunc performs global alignments.

From Debian's description of the subread package, under that package's license.

Dependencies

Depends on

libc6
zlib1g

Related apps

mummerEfficient sequence alignment of full genomesCommand line
ea-utilscommand-line tools for processing biological sequencing dataCommand line
open3d-toolsLibrary for 3D data processing - toolsCommand line
bowtie2ultrafast memory-efficient short read alignerCommand line
sra-toolkitutilities for the NCBI Sequence Read ArchiveCommand line
bowtieUltrafast memory-efficient short read alignerCommand line

All Linux science apps

Sources and licenses

Name: the Debian package name.
Summary: Debian's short description of the subread package, under that package's license.
Description: Debian's description of the subread package, under that package's license.
Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
Popularity: Debian Popularity Contest counts.