cat-bat
taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
Command lineScience
Not tested on a device yet. What that means
Commands in the package
CAT
About cat-bat
From Debian's package description
Contig Annotation Tool (CAT) and Bin Annotation Tool (BAT) are pipelines for the taxonomic classification of long DNA sequences and metagenome assembled genomes (MAGs/bins) of both known and (highly) unknown microorganisms, as generated by contemporary metagenomics studies. The core algorithm of both programs involves gene calling, mapping of predicted ORFs against the nr protein database, and voting-based classification of the entire contig / MAG based on classification of the individual ORFs. CAT and BAT can be run from intermediate steps if files are formatted appropriately.
From Debian's description of the cat-bat package, under that package's license.
Dependencies
Depends on
Related apps
- bali-phyBayesian Inference of Alignment and PhylogenyCommand line
- graphlancircular representations of taxonomic and phylogenetic treesCommand line
- lefsedetermine features of organisms, clades, taxonomic units, genesCommand line
- mashfast genome and metagenome distance estimation using MinHashCommand line
- surankcoSupervised Ranking of Contigs in de novo AssembliesCommand line
- kraken2taxonomic classification system using exact k-mer matchesCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the cat-bat package, under that package's license.
- Description: Debian's description of the cat-bat package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
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