surankco

Supervised Ranking of Contigs in de novo Assemblies

Command lineScience

Not tested on a device yet. What that means

Commands in the package

surankco-feature
surankco-prediction
surankco-score
surankco-training

About surankco

From Debian's package description

SuRankCo is a machine learning based software to score and rank contigs from de novo assemblies of next generation sequencing data. It trains with alignments of contigs with known reference genomes and predicts scores and ranking for contigs which have no related reference genome yet.

From Debian's description of the surankco package, under that package's license.

Dependencies

Depends on

libhtsjdk-java
r-base-core
r-cran-mass
r-cran-optparse
r-cran-randomforest

Related apps

phastphylogenetic analysis with space/time modelsCommand line
kaptiveobtain information about K and O types for Klebsiella genome assembliesCommand line
cat-battaxonomic classification of contigs and metagenome-assembled genomes (MAGs)Command line
kleboratetool to screen Klebsiella genome assembliesCommand line
conservation-codeprotein sequence conservation scoring toolCommand line
sspacescaffolding pre-assembled contigs after extensionCommand line

All Linux science apps

Sources and licenses

Name: the Debian package name.
Summary: Debian's short description of the surankco package, under that package's license.
Description: Debian's description of the surankco package, under that package's license.
Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
Popularity: Debian Popularity Contest counts.