covtobed
convert the coverage track from a BAM file into a BED file
Command lineScience
Not tested on a device yet. What that means
Commands in the package
covtobed
About covtobed
From Debian's package description
Reads one (or more) alignment files (sorted BAM) and prints a BED with the coverage. It will join consecutive bases with the same coverage, and can be used to only print a BED file with the regions having a specific coverage range.
From Debian's description of the covtobed package, under that package's license.
Dependencies
Depends on
libbamtools2.5.2libc6libgcc-s1libstdc++6bamtoolszlib1g
Related apps
- picard-toolsCommand line tools to manipulate SAM and BAM filesCommand line
- bedopshigh-performance genomic feature operationsCommand line
- bamkittools for common BAM file manipulationsCommand line
- bamtoolstoolkit for manipulating BAM (genome alignment) filesCommand line
- megadepthcomputes coverage from BigWig and BAM sequencing filesCommand line
- discosnpdiscovering Single Nucleotide Polymorphism from raw set(s) of readsCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the covtobed package, under that package's license.
- Description: Debian's description of the covtobed package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
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